MmuEX1002103 @ mm10
Exon Skipping
Gene
ENSMUSG00000046085 | 4931422A03Rik
Description
RIKEN cDNA 4931422A03 gene [Source:MGI Symbol;Acc:MGI:1918236]
Coordinates
chr2:104016522-104026212:-
Coord C1 exon
chr2:104026130-104026212
Coord A exon
chr2:104025542-104025599
Coord C2 exon
chr2:104016522-104016622
Length
58 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTTTTCCAACCTAAGAGC
3' ss Score
5.08
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGGTTGTGTGGTGAGAGAGGCTTGGGAAATCCAAAAGACGTCACAGGTCAGTCACTTACGTGGCTTGACTGTTCCATGTTCCA
Seq A exon
AGCCCTTCTTAGTGGGACAAGAAAGCTGGGAGCTACGGTTGGCTTGAGAGAGTATGAG
Seq C2 exon
GCCTGTGTGTGTTAGGTTCTTTAGTCTAAGACACAGATTATAGACTAAAGATTTAAGCATTGTTGTACAGCTGTACAATGTGTTTGTGTCTTAGGGTGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046085-'5-3,'5-2,7-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSMUST00000056170fB4967
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTCAGTCACTTACGTGGC
R:
ACACCCTAAGACACAAACACA
Band lengths:
139-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types