Special

MmuEX1002102 @ mm10

Exon Skipping

Gene
ENSMUSG00000046085 | 4931422A03Rik
Description
RIKEN cDNA 4931422A03 gene [Source:MGI Symbol;Acc:MGI:1918236]
Coordinates
chr2:103992495-103993912:-
Coord C1 exon
chr2:103993885-103993912
Coord A exon
chr2:103993380-103993411
Coord C2 exon
chr2:103992495-103992823
Length
32 bp
Sequences
Splice sites
3' ss Seq
AAAATTTCTCCTGGATACAGGAA
3' ss Score
5.55
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
CTGGATCCATAACAGAGAATCCGGATGG
Seq A exon
GAAGATCAGGAGTTCAAGGCCAGCCTTGGCTA
Seq C2 exon
CAAGCTGCAAAAATTGGCAGGGGCCCTTCAGTGTGCTGTCGATGTGTCTGGAATTCAAATAGTAGGATGCAGAGATGCCATGACAATGGGAAGCAAGCTTTACCTGGAGAAAATGATGCGGACATGGCTGCTGCAACCCGTACTCACACACGGGGACCTTCGCAACCACTCTCCAGCGGTCCCCATCATGCCTGACTGCGATTGCCCTTACTCAAGGGCATTAAATTAAAAAGTAATGTAGCCGGTGATTCTTTTTTTCCCCTATCCTCCCCCCCCCTCCCCATCCAGGCAGTGAAGAATGGGGCAAGTAAAATAAAAACCTTGACTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046085-'9-9,'9-8,10-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact

In the CDS, with uncertain impact

No structure available
Features
Disorder rate (Iupred):
  C1=0.150 A=0.333 C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:
ENSMUST00000056170fB4966


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCCATAACAGAGAATCCGGA
R:
CCATTGTCATGGCATCTCTGC
Band lengths:
116-148
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types