MmuEX0001765 @ mm10
Exon Skipping
Gene
ENSMUSG00000046085 | 4931422A03Rik
Description
RIKEN cDNA 4931422A03 gene [Source:MGI Symbol;Acc:MGI:1918236]
Coordinates
chr2:104026167-104027793:-
Coord C1 exon
chr2:104027777-104027793
Coord A exon
chr2:104027222-104027287
Coord C2 exon
chr2:104026167-104026212
Length
66 bp
Sequences
Splice sites
3' ss Seq
GCCCAAGCCCTTACCACCAGGCT
3' ss Score
2.8
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GCGGCCGCTAGCACAGG
Seq A exon
GCTTCTAAACCTACTGGTCCCAGAGAAAGTTTCTTCCAACTACTTAAGTGTAAGAAATAATCAAAT
Seq C2 exon
GGGTTGTGTGGTGAGAGAGGCTTGGGAAATCCAAAAGACGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046085-'1-1,'1-0,2-1=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types