MmuEX0001765 @ mm9
Exon Skipping
Gene
ENSMUSG00000046085 | 4931422A03Rik
Description
RIKEN cDNA 4931422A03 gene [Source:MGI Symbol;Acc:MGI:1918236]
Coordinates
chr2:103866287-103868465:-
Coord C1 exon
chr2:103867935-103868465
Coord A exon
chr2:103867379-103867444
Coord C2 exon
chr2:103866287-103866369
Length
66 bp
Sequences
Splice sites
3' ss Seq
GCCCAAGCCCTTACCACCAGGCT
3' ss Score
2.8
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
CCCCAAAGGGCCAGCGAGGGTCCGCGGGGTGCAGGACCAGGGAGCCACCTCTCTCTTCCGCAACCCGGCCTAGCCGAGGCTTGAGGGAGAGGGCGCTAAGTTCCCGGGGACCTAGGCCTGGGCAGGGGTAAGACCTGGATGCCCAGACCGCTCCCCCGAGTCTCCTTCAGCCCCCCGGGGCGCTATGCGGGATAACGGCCGCCTTGCAGTCACCCTGCTGCGGAGGGAGCCCACGTCCAGCCAGCGACCCCGGGCCTCCTTCCCTGCCTCCTTCCACGTTCCCACCCCTGCCGAGAGCACCGCCCCATTACTTGATTAGGTCCCTGTAGTCCACGAAGGATAAGATGAGCAGCAGAGGGTCGGTGGGCAGCGACTCCAGGGTCAGCAGCCCCGTCTCGGCCTCTACGGCAGCCATCTTGCCCGGCCCGCTGCAGCCTTGGCACCACCCCGGCCCCGCCCCCGCCCCCGCCGCCCGAACCGCTCGGCGGCCGCTAGCACAG
Seq A exon
GCTTCTAAACCTACTGGTCCCAGAGAAAGTTTCTTCCAACTACTTAAGTGTAAGAAATAATCAAAT
Seq C2 exon
GGGTTGTGTGGTGAGAGAGGCTTGGGAAATCCAAAAGACGTCACAGGTCAGTCACTTACGTGGCTTGACTGTTCCATGTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046085_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGAGCAGCAGAGGGTCG
R:
AAGCCTCTCTCACCACACAAC
Band lengths:
182-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: