MmuEX0001846 @ mm10
Exon Skipping
Gene
ENSMUSG00000053896 | 4933409G03Rik
Description
RIKEN cDNA 4933409G03 gene [Source:MGI Symbol;Acc:MGI:3045336]
Coordinates
chr2:68593422-68601939:+
Coord C1 exon
chr2:68593422-68593450
Coord A exon
chr2:68593542-68593611
Coord C2 exon
chr2:68601731-68601939
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTGCTTCAAATCCTATCCAGCCT
3' ss Score
4.28
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CATGGATTGAGAAAGATGATTCCTTGAAG
Seq A exon
CCTACAACTACAGAGAAAAAGTCTTCCTCAGATGACATAGAAATAATCATGTTAAAACCATTCAATTCAG
Seq C2 exon
ATTTGTCTGTAGAGGAGGTCATCGAAGTGTCATCGGAAGAAGAACAGAAGGGAGGTGATGAGGAGGAGGATGAGGATAACGACGGTGATGATGAGGATGGTGATGATGGCGATGACGAGGGTGGCGATGACGAGGATGGTGGTGATGAGGACGGTGATGATGGGGATGGAGGTGATGATGAAGGTGTCGCTGGACAAGCACAACTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053896-'13-15,'13-14,14-15
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTGAGAAAGATGATTCCTTGA
R:
TCATCACCACCATCCTCGTCA
Band lengths:
175-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types