MmuEX0002089 @ mm9
Exon Skipping
Gene
ENSMUSG00000072591 | 5930412G12Rik
Description
RIKEN cDNA 5930412G12 gene [Source:MGI Symbol;Acc:MGI:2442398]
Coordinates
chr5:129091230-129106562:-
Coord C1 exon
chr5:129106412-129106562
Coord A exon
chr5:129100083-129100785
Coord C2 exon
chr5:129091230-129091281
Length
703 bp
Sequences
Splice sites
3' ss Seq
TTATTTATTTATTTTTTAAGACT
3' ss Score
6.33
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AGCCCCAGCTTGGGGCTGGACCCCAGCCTCCAGCCTCACCTCCTGCCGGCCTCTCTGCTTGCCCTCCCCGCCCCAGAGGGGGGGTGGGAGGCCTTGAGATTGTCCCCGGTACCCCAAGGACGCCGAGGTTACGGGAAGTTTGGGGACTCGG
Seq A exon
ACTTGGGATGGAGTGAATATCAGACAGCTACAAGGAAGGATTTAGAAGCAGGCCACTTGGCCACTTGGGATTTACTAGCCAGCAGACTCCCTGGCTAGTTGAGTGTGTGAGTGTTTGCCTGTAACTGTACCTGTACACATGCCTACTTGGTGGCCTAGGAGGCCAGAAGAAGGTGGTCAGATCTCCTGGAACTGGAGTTATAGGCGGTTGTGGGCCACCATCTGGGTCCTGGGATACTGAACCTGTGTCCTCTGCAAGAGCAGCAAGTGTTCTTAACGACTGAGCCATTTCTTCGGCCCTCTTTCTTCAATTCTCCATTGTCCTGCTAGAAGGCAGAATGACTTCGTCGACAACCTCATGCAGGAGTGGAACCAATCTCCTTCCCCGTGGGTGGCTGGGCATGTAGCTTCCTCTTTCTGTCTTGAGTGTTGCCAAGGAAAAGGGGCTGCAGATCTCCCCTGGATTGCAGAGTGGGAGACAAAGCAAGGGCCCCAGAAGAGCTCTCTGGATGCTCCTGGCTACTGAATCAACCGCAGAGCGCCCTCTGGGGCTGGGGTCTGACACTGTTACCCCTCCTGGCCTTATGGACGCAGATCCAGCTCAGCCTCACAATGAATTCAATGGTTCCTGAAAGCTTGTGCTCGGCCTGCCCACCTTCATCCACAGGGCAACATGGGAGCCAGACTTCTCTCTGTGGTATAAG
Seq C2 exon
GCCCCAGTATCCTGAGTTCTTCCAGGAGAAGGAAGATGGCGAAGACAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072591_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACCCCAGCCTCCAG
R:
TCACTGTCTTCGCCATCTTCC
Band lengths:
187-890
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: