MmuEX0002089 @ mm10
Exon Skipping
Gene
ENSMUSG00000072591 | 5930412G12Rik
Description
RIKEN cDNA 5930412G12 gene [Source:MGI Symbol;Acc:MGI:2442398]
Coordinates
chr5:128585272-128600687:-
Coord C1 exon
chr5:128600537-128600687
Coord A exon
chr5:128594208-128594910
Coord C2 exon
chr5:128585272-128585406
Length
703 bp
Sequences
Splice sites
3' ss Seq
TTATTTATTTATTTTTTAAGACT
3' ss Score
6.33
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AGCCCCAGCTTGGGGCTGGACCCCAGCCTCCAGCCTCACCTCCTGCCGGCCTCTCTGCTTGCCCTCCCCGCCCCAGAGGGGGGGTGGGAGGCCTTGAGATTGTCCCCGGTACCCCAAGGACGCCGAGGTTACGGGAAGTTTGGGGACTCGG
Seq A exon
ACTTGGGATGGAGTGAATATCAGACAGCTACAAGGAAGGATTTAGAAGCAGGCCACTTGGCCACTTGGGATTTACTAGCCAGCAGACTCCCTGGCTAGTTGAGTGTGTGAGTGTTTGCCTGTAACTGTACCTGTACACATGCCTACTTGGTGGCCTAGGAGGCCAGAAGAAGGTGGTCAGATCTCCTGGAACTGGAGTTATAGGCGGTTGTGGGCCACCATCTGGGTCCTGGGATACTGAACCTGTGTCCTCTGCAAGAGCAGCAAGTGTTCTTAACGACTGAGCCATTTCTTCGGCCCTCTTTCTTCAATTCTCCATTGTCCTGCTAGAAGGCAGAATGACTTCGTCGACAACCTCATGCAGGAGTGGAACCAATCTCCTTCCCCGTGGGTGGCTGGGCATGTAGCTTCCTCTTTCTGTCTTGAGTGTTGCCAAGGAAAAGGGGCTGCAGATCTCCCCTGGATTGCAGAGTGGGAGACAAAGCAAGGGCCCCAGAAGAGCTCTCTGGATGCTCCTGGCTACTGAATCAACCGCAGAGCGCCCTCTGGGGCTGGGGTCTGACACTGTTACCCCTCCTGGCCTTATGGACGCAGATCCAGCTCAGCCTCACAATGAATTCAATGGTTCCTGAAAGCTTGTGCTCGGCCTGCCCACCTTCATCCACAGGGCAACATGGGAGCCAGACTTCTCTCTGTGGTATAAG
Seq C2 exon
GCCCCAGTATCCTGAGTTCTTCCAGGAGAAGGAAGATGGCGAAGACAGTGAGGGAAGAGAGCAGACGTCTGACTCCGGGGTGCTTATCTGTGTGGAAGAGACCGGTTCTTCCTGACTGGCTTCATGTCCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072591_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACCCCAGCCTCCAG
R:
TTGAGGGACATGAAGCCAGTC
Band lengths:
270-973
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types