MmuEX1002376 @ mm10
Exon Skipping
Gene
ENSMUSG00000072591 | 5930412G12Rik
Description
RIKEN cDNA 5930412G12 gene [Source:MGI Symbol;Acc:MGI:2442398]
Coordinates
chr5:128585272-128600687:-
Coord C1 exon
chr5:128600537-128600687
Coord A exon
chr5:128587179-128587290
Coord C2 exon
chr5:128585272-128585406
Length
112 bp
Sequences
Splice sites
3' ss Seq
GACTGGACCTTTGGTTCCAGGTC
3' ss Score
7.05
5' ss Seq
CAGGTCTTT
5' ss Score
2.36
Exon sequences
Seq C1 exon
AGCCCCAGCTTGGGGCTGGACCCCAGCCTCCAGCCTCACCTCCTGCCGGCCTCTCTGCTTGCCCTCCCCGCCCCAGAGGGGGGGTGGGAGGCCTTGAGATTGTCCCCGGTACCCCAAGGACGCCGAGGTTACGGGAAGTTTGGGGACTCGG
Seq A exon
GTCTTCCAGAATGAGCCCAGTGTGGACGGGGAAACGTTGAATACAGGGCACCCAGGAATGGAAAAGACACCAAGGGATGTATCACCTCTGTATCGAGCACCCAGGGGAACAG
Seq C2 exon
GCCCCAGTATCCTGAGTTCTTCCAGGAGAAGGAAGATGGCGAAGACAGTGAGGGAAGAGAGCAGACGTCTGACTCCGGGGTGCTTATCTGTGTGGAAGAGACCGGTTCTTCCTGACTGGCTTCATGTCCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072591_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAGCCTCACCTCCTG
R:
GAAGCCAGTCAGGAAGAACCG
Band lengths:
248-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types