MmuEX0002618 @ mm10
Exon Skipping
Gene
ENSMUSG00000090919 | Pabpc4l
Description
poly(A) binding protein, cytoplasmic 4-like [Source:MGI Symbol;Acc:MGI:3643087]
Coordinates
chr3:46447292-46447941:-
Coord C1 exon
chr3:46447817-46447941
Coord A exon
chr3:46447505-46447633
Coord C2 exon
chr3:46447292-46447392
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTCTGCCTTGCTCTCCCCAGGCT
3' ss Score
10.55
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GCAGAGGCTGGGGAGCGAGCCAGAGGGGCGGGGGAGGAGCATGGTACCCCCCCAAAAAAGTGTGAAAGAGCAAACAGTGCTAGCCAGCGAGCTCCGGGTTCCTGCCGCCTGCAGTCCATAACCTG
Seq A exon
GCTTGGCTGAAAGTTTAAGCCAGCAGAACACAGGAACACAGCACAGGGTCTGGGCCTGTTTGTGCTCCGAAACCAGCCACCAGCGCCTGGGATGGAGGCAGATGAAGGGCCTGTCCTGGCCAGCCACTT
Seq C2 exon
GTATTGCCTGGAAAGTGCAAGTGACCCTGTAGCTGGACCTCTAAGTGGTCTTTGGAGGCCACTGTGCAGGTCCTGAGTTTTGACTGCGCTTCCCCTCTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090919-'1-3,'1-2,2-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGCTGGGGAGCGAG
R:
GGGAAGCGCAGTCAAAACTCA
Band lengths:
218-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types