MmuEX0002618 @ mm9
Exon Skipping
Gene
ENSMUSG00000090919 | AC101968.1
Description
poly(A) binding protein, cytoplasmic 4-like [Source:MGI Symbol;Acc:MGI:3643087]
Coordinates
chr3:46246119-46251863:-
Coord C1 exon
chr3:46251739-46251863
Coord A exon
chr3:46251427-46251555
Coord C2 exon
chr3:46246119-46251211
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTCTGCCTTGCTCTCCCCAGGCT
3' ss Score
10.55
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GCAGAGGCTGGGGAGCGAGCCAGAGGGGCGGGGGAGGAGCATGGTACCCCCCCAAAAAAGTGTGAAAGAGCAAACAGTGCTAGCCAGCGAGCTCCGGGTTCCTGCCGCCTGCAGTCCATAACCTG
Seq A exon
GCTTGGCTGAAAGTTTAAGCCAGCAGAACACAGGAACACAGCACAGGGTCTGGGCCTGTTTGTGCTCCGAAACCAGCCACCAGCGCCTGGGATGGAGGCAGATGAAGGGCCTGTCCTGGCCAGCCACTT
Seq C2 exon
GAAGCTACAGCCTTGAGAGCTGCAGGCTTGTAGAGTTGGGGTCAAAAAAAGGAAATAAACCAAACAAGCCAAGAAGAAAAAGATGAGTCTGGAAGCTAAGTACCGTGCAGCTTCCCTCTACGTGGGTGACCTCCACGAAGATGTCACGGAGGACATGCTCTTCAGGAAGTTCAGCACAGTGGGGCCGGTGTTGTCCATCCGAATCTGCAGGGACCTGATTTCCCAACGTTCACTAGGCTACGCCTATGTCAATTTTCTCCAGGTTAATGATGCCCAGAAGGCCTTAGTCACCATGAACTTTGACGTGATCAAAGGTAAATCCATTCGTCTCATGTGGTCTCAACGGGATGCTTGCCTGAGGAGATCGGGAGTCGGGAATGTGTTTATCAAGAATCTGGACAAATCCATTGATAACAAAACCTTGTATGAACACTTCTCACCTTTTGGAACGATCATGTCTTCCAAGGTGATGACTGATGGAGAAGGCTCCAAGGGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090919-'1-1,'1-0,2-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0007617=RRM_1=WD(100=19.1),PF0007617=RRM_1=WD(100=18.6),PF0007617=RRM_1=WD(100=18.9),PF0227010=TFIIF_beta=WD(100=41.8),PF0172511=Ham1p_like=WD(100=29.9),PF0007617=RRM_1=WD(100=18.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCTGCAGTCCATAACCTG
R:
TGAACGTTGGGAAATCAGGTCC
Band lengths:
252-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types