MmuEX0002963 @ mm9
Exon Skipping
Gene
ENSMUSG00000035435 | Abca17
Description
ATP-binding cassette, sub-family A (ABC1), member 17 [Source:MGI Symbol;Acc:MGI:3625331]
Coordinates
chr17:24472480-24483347:-
Coord C1 exon
chr17:24483086-24483347
Coord A exon
chr17:24474655-24474775
Coord C2 exon
chr17:24472480-24472607
Length
121 bp
Sequences
Splice sites
3' ss Seq
AAAACTTTTTTTTTAAAAAGGCA
3' ss Score
5.21
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AGGCGGAAGACTCTGATAACTCTCCTGGAAATGTTGATGCCATTACTGTTTTGTGCAATTGTATTATATCTCCGTTTGAATAGTATGCCAAGAAAGAAGTCATCTACCAACTACCCGGCAGTTGATGTCAGTTTACTGCCAGTATACTTCTATAACTATCCTCTGAAAAGTAAATTTCAGTTGGCTTATATCCCTTCCAAAAGTGAAACCTTAAAAGCTGTCACTGAAGTGGTGGAGCAAACCTTTGCTGTTGACTTTGAAG
Seq A exon
GCACCTCATTCTGTATCTCAAAGAAGCCCACCACAAATGTGCTATGGTCAACAAGCAAACATTCTTGAACCAAAAAACAAACACTAAAGCTTGATCCACATCTCAAGTTATGTAACCAAAG
Seq C2 exon
TTCTAGGCTTTCCTTCAGTGCCTTTATTTGAAGACTATATAATTAAGGATCCCAAGTCTTTCTACATACTGGTGGGAATTATTTTTCACCATGACTTCAATAGCAGCAATGAACCTTTGCCACTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035435-'2-4,'2-3,3-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(19.1=96.6)
A:
NO
C2:
PF126982=ABC2_membrane_3=FE(9.5=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGGCAGTTGATGTCAGTTT
R:
TGCTGCTATTGAAGTCATGGTGA
Band lengths:
257-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: