MmuEX0002974 @ mm10
Exon Skipping
Gene
ENSMUSG00000024130 | Abca3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:MGI Symbol;Acc:MGI:1351617]
Coordinates
chr17:24351950-24361089:+
Coord C1 exon
chr17:24351950-24352251
Coord A exon
chr17:24357919-24357991
Coord C2 exon
chr17:24360888-24361089
Length
73 bp
Sequences
Splice sites
3' ss Seq
GCTTTTTTTCTTATTTTTAGAGA
3' ss Score
9.34
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
AGACGCTGAATCCAGAGCTTAGGCGAGGCTGAGCCGGCCGGGGGCAAACCCGGGGCACCTGCAGGGGCGGCCCAGTGCGCACGCGCGCTCCGACGCGCCCCCCCACCCCCTCCAGGAGCCGGAGCTTCCTGGTGCGTTCTTCCACCCGCGCCTGTCGCAGGCGCCTCCTCTCTGCCCCGCCGCCTCAGTTGTCAGCTTCGGCCGCAACCGCCCCAGCAAGGCTGGAGCAGGACCGGGAGTCTAAGGGAGGGAACCTGGCGAGAGAGCTGCGCAGACCGCCGCCACCCTGGCGCTGAGGGTCG
Seq A exon
AGAATACAAGAAAATTGCTCACTATCCCTCCACTGTGATGTACTGTCTTGTTCATTCTGCTTGGAAACAACTG
Seq C2 exon
GTGCCAGCACATCATGCCCGTGAGCCCCAGGTCCCTCCAGATGTCCCTGGAGATCTCAGCGTTCCTGCTCCCTAGGGCTGTTGCTTCTGTCCAGGGGACCACTGGCTCCACCCCAGGGTCATCTGTGTAGAACTGCTGACGCCAGGCGACTTCACCCGTAGCCTTGCAGTGACACCTTCAGCCAACCTTTCCTGGAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024130-'0-4,'0-0,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGGACCGGGAGTCTAAG
R:
GACAGAAGCAACAGCCCTAGG
Band lengths:
169-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types