MmuEX0003001 @ mm10
Exon Skipping
Gene
ENSMUSG00000044749 | Abca6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:MGI Symbol;Acc:MGI:1923434]
Coordinates
chr11:110250398-110251776:-
Coord C1 exon
chr11:110251572-110251776
Coord A exon
chr11:110250651-110250724
Coord C2 exon
chr11:110250398-110250504
Length
74 bp
Sequences
Splice sites
3' ss Seq
AATGTTCTGTTTTATTGTAGAAG
3' ss Score
8.46
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
AGAGAGAGAGAGGACACAGAAAACAAAACAGATTCATCATGTGCAGCCTGGAGTGACCACATCCCCTTTCGGAAAGCAGTGTGCAAAGGAACCGCGGAGAGCAGCCACCTACTTAAGAAATGTTTACGGAAGGAGAGAAAGTGCTCAAAGGGATGCACTAGGAAAAGAAGCCTGCCTGTTCCGGGAGTGCGAATATTCCTCAGTA
Seq A exon
AAGTGTGATGATAACCACGCCCTATCATCACCGTCACCCGTCCCTCCACATAGCTTAAAGAGAATGCATTTGAG
Seq C2 exon
GTGAGGCAAGTATGAAGGAGCTAAGTGTGCACGTGCGCCAGCAGACCCGCGCCCTTCTGCACAAGATTCTGCTCAAGAAATGGCGGAGGAAGAGAGAGAGCTTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044749_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(1.0=12.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATCCCCTTTCGGAAAGCA
R:
CACGTGCACACTTAGCTCCTT
Band lengths:
183-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types