MmuEX0003001 @ mm9
Exon Skipping
Gene
ENSMUSG00000044749 | Abca6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:MGI Symbol;Acc:MGI:1923434]
Coordinates
chr11:110111712-110113090:-
Coord C1 exon
chr11:110112886-110113090
Coord A exon
chr11:110111965-110112038
Coord C2 exon
chr11:110111712-110111818
Length
74 bp
Sequences
Splice sites
3' ss Seq
AATGTTCTGTTTTATTGTAGAAG
3' ss Score
8.46
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
AGAGAGAGAGAGGACACAGAAAACAAAACAGATTCATCATGTGCAGCCTGGAGTGACCACATCCCCTTTCGGAAAGCAGTGTGCAAAGGAACCGCGGAGAGCAGCCACCTACTTAAGAAATGTTTACGGAAGGAGAGAAAGTGCTCAAAGGGATGCACTAGGAAAAGAAGCCTGCCTGTTCCGGGAGTGCGAATATTCCTCAGTA
Seq A exon
AAGTGTGATGATAACCACGCCCTATCATCACCGTCACCCGTCCCTCCACATAGCTTAAAGAGAATGCATTTGAG
Seq C2 exon
GTGAGGCAAGTATGAAGGAGCTAAGTGTGCACGTGCGCCAGCAGACCCGCGCCCTTCTGCACAAGATTCTGCTCAAGAAATGGCGGAGGAAGAGAGAGAGCTTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044749-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(1.0=12.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATCCCCTTTCGGAAAGCA
R:
CACGTGCACACTTAGCTCCTT
Band lengths:
183-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: