MmuEX0003325 @ mm10
Exon Skipping
Gene
ENSMUSG00000015787 | Abo
Description
ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase, transferase B, alpha 1-3-galactosyltransferase) [Source:MGI Symbol;Acc:MGI:2135738]
Coordinates
chr2:26842503-26864979:-
Coord C1 exon
chr2:26864871-26864979
Coord A exon
chr2:26848921-26848990
Coord C2 exon
chr2:26842503-26843874
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTGTGCTGCTGTTTTTTCAGGAA
3' ss Score
10.54
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ATTATCTCCCCTGGGGGTGAGTTCTCCTGTGTGCCTGAGACCTGGCCTGTGCCTAACAGCTTGCTGCACAGACACTGAACCATCCTGGGTTCTGACATGAATCTCAGAG
Seq A exon
GAAGACCGAAATGCAACTTCCTTCACCTTGGAATCCTTCCCTTCGCAGTGTTTGTCTTAGTCTTCTTTGG
Seq C2 exon
GTATGTGGTGTTCCTTAAGCTGTTCCTTGAGACTGCAGAACAACACTTCATGGTGGGACACAAGGTCATCTACTATGTCTTCACTGACCGTCCAGCTGATGTGCCACAGGTGATCCTGGGTGCAGGACGGCAACTGGTGGTGCTAACTGTGCGCAACTATACTCGATGGCAGGATGTGTCCATGCACAGGATGGAGATGATCAGCCACTTCTCAGAGCGACGCTTTCTACGTGAGGTGGATTACCTGGTGTGTGCAGATGCGGACATGAAGTTCAGTGACCATGTGGGTGTGGAGATTCTCTCAACATTCTTTGGCACTCTGCACCCTGGCTTCTACAGTAGCAGCCGAGAGGCCTTTACCTATGAGCGCCGGCCACAGTCCCAGGCCTACATCCCCTGGGACAGGGGTGACTTTTACTACGGAGGAGCCTTCTTTGGGGGGTCAGTGCTAGAAGTGTACCATCTCACCAAGGCCTGCCATGAAGCTATGATGGAGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015787_MULTIEX1-2/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.209 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF034148=Glyco_transf_6=PD(76.3=99.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAACAGCTTGCTGCACAGA
R:
GGATCACCTGTGGCACATCAG
Band lengths:
174-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types