MmuEX0003328 @ mm10
Exon Skipping
Gene
ENSMUSG00000015787 | Abo
Description
ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase, transferase B, alpha 1-3-galactosyltransferase) [Source:MGI Symbol;Acc:MGI:2135738]
Coordinates
chr2:26842503-26864979:-
Coord C1 exon
chr2:26864871-26864979
Coord A exon
chr2:26845956-26846090
Coord C2 exon
chr2:26842503-26843874
Length
135 bp
Sequences
Splice sites
3' ss Seq
GTGGCTCTCTCCTCATGTAGTAG
3' ss Score
5.02
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
ATTATCTCCCCTGGGGGTGAGTTCTCCTGTGTGCCTGAGACCTGGCCTGTGCCTAACAGCTTGCTGCACAGACACTGAACCATCCTGGGTTCTGACATGAATCTCAGAG
Seq A exon
TAGGAAAGATGTTCTTGTCTTGACTCCTTGGCTGGCGCCCATCATCTGGGAGGGGACCTTCAACATCGACATATTGAATGAGCAGTTCAGGATTCGGAATACTACGATTGGACTGACTGTATTTGCTATCAAAAA
Seq C2 exon
GTATGTGGTGTTCCTTAAGCTGTTCCTTGAGACTGCAGAACAACACTTCATGGTGGGACACAAGGTCATCTACTATGTCTTCACTGACCGTCCAGCTGATGTGCCACAGGTGATCCTGGGTGCAGGACGGCAACTGGTGGTGCTAACTGTGCGCAACTATACTCGATGGCAGGATGTGTCCATGCACAGGATGGAGATGATCAGCCACTTCTCAGAGCGACGCTTTCTACGTGAGGTGGATTACCTGGTGTGTGCAGATGCGGACATGAAGTTCAGTGACCATGTGGGTGTGGAGATTCTCTCAACATTCTTTGGCACTCTGCACCCTGGCTTCTACAGTAGCAGCCGAGAGGCCTTTACCTATGAGCGCCGGCCACAGTCCCAGGCCTACATCCCCTGGGACAGGGGTGACTTTTACTACGGAGGAGCCTTCTTTGGGGGGTCAGTGCTAGAAGTGTACCATCTCACCAAGGCCTGCCATGAAGCTATGATGGAGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015787_MULTIEX1-5/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF034148=Glyco_transf_6=FE(15.1=100)
C2:
PF034148=Glyco_transf_6=PD(76.3=99.1)
Main Skipping Isoform:
ENSMUST00000102900fB5229
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTCTCCTGTGTGCCTGA
R:
ACAGTTAGCACCACCAGTTGC
Band lengths:
242-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types