GgaEX0004380 @ galGal4
Exon Skipping
Gene
ENSGALG00000003340 | GBGT1
Description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 [Source:RefSeq peptide;Acc:NP_001025854]
Coordinates
chr17:6830389-6835802:-
Coord C1 exon
chr17:6835767-6835802
Coord A exon
chr17:6833701-6833835
Coord C2 exon
chr17:6830389-6833144
Length
135 bp
Sequences
Splice sites
3' ss Seq
TAACATTCCCCCTTTTTCAGGCG
3' ss Score
9.36
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ATTATTTTATCAGCAACCAAGAGTGCTGGCTCCAAA
Seq A exon
GCGTCAGGATGTGCTAACAGTCACACCATGGTTGGCCCCCATCGTTTGGGAAGGCACCTTCAGCCCTGAGATCCTGGACAGTGCCTACATGCCACTGAATCTCACCATAGGGGTGACAGCCTTTGCCGTTGGAAA
Seq C2 exon
ATACACGAGGTTTGTGAGCCGCTTCCTGAAGTCAGCAGAGATGCACTTCATGAAAGGCTATCGAGTGAACTACTACATCTTCACTGACAACCCCGAGATGATCCCCGATGTCCAGCTGCAGCCTGGACGAAGGTTTGATGTTGTGCACATCAAGAAATACTCCAGCTGGCAAGAGATCTCCGTGCGCAGGATGGAGGCCATAAACCTACACATAGCAGAGAGGAGCCATCGGGAGGTGGACTACCTCTTCTGCCTGGATATTGACATGGTGTTCCACAATGCCTGGGGGGCTGAGACCCTCGGTGACATGGTGGCAGCCATACACCCTGGTTATTTCAATGTCCCTCGAAGCCAGTTCCCATATGAGAGGAGGAGCTCTTCAGCAGCCTACATCCCTGACGGAGAAGGGGACTTCTACTATGGAGGAGCTGTGTTTGGAGGGCTGGTCAAGAAGGTCTACGAGTTCACCAAGATCTGCCACATGACCATCCTGGCAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003340_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(3.6=100)
A:
PF034148=Glyco_transf_6=FE(13.4=100)
C2:
PF034148=Glyco_transf_6=PD(67.4=99.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCAACCAAGAGTGCTGG
R:
TGGCTCCTCTCTGCTATGTGT
Band lengths:
256-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]