MmuEX0020161 @ mm10
Exon Skipping
Gene
ENSMUSG00000026829 | Gbgt1
Description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 [Source:MGI Symbol;Acc:MGI:2449143]
Coordinates
chr2:28502197-28505415:+
Coord C1 exon
chr2:28502197-28502232
Coord A exon
chr2:28503126-28503260
Coord C2 exon
chr2:28504711-28505415
Length
135 bp
Sequences
Splice sites
3' ss Seq
CTAATCCTGCCCTGTGCCAGACC
3' ss Score
5.49
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GTTACAGTACCCTCAGCCTAAGCTGCTGGAACACGG
Seq A exon
ACCCACAGAGCTGCTGACACTTACCCCGTGGTTGGCACCCATCGTCTCCGAGGGAACCTTTGACCCGGAGCTTCTGAAGAGCATGTACCAGCCGTTGAACCTGACCATTGGCGTCACCGTGTTTGCCGTGGGGAA
Seq C2 exon
GTACACCTGCTTCATTCAGCGCTTCCTGGAGTCAGCTGAAGAGTTCTTTATGCGTGGGTACCAAGTACACTATTACCTCTTTACCCATGATCCTACAGCCGTTCCCAGAGTTCCCCTGGGCCCCGGTCGGCTCCTCAGCATCATCCCTATCCAGGGTTATTCCCGGTGGGAGGAGATCTCCATGCGCCGAATGGAGACCATCAACAAACACATTGCCAAGAGAGCCCACAAAGAAGTGGATTACCTCTTCTGTGTCGATGTGGATATGGTCTTCCGTAACCCATGGGGCCCCGAGACCTTGGGGGATCTAGTGGCTGCCATTCACCCAGGCTATTTTGCTGTACCTCGCCGGAAATTCCCTTATGAACGCAGGCAAGTTTCCTCTGCCTTTGTGGCAGACAATGAGGGGGACTTCTATTATGGTGGGGCACTCTTTGGGGGACGAGTGGCCAGAGTGTATGAGTTTACCCGGGCCTGCCACATGGCCATTCTGGCAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026829_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(3.6=100)
A:
PF034148=Glyco_transf_6=FE(13.4=100)
C2:
PF034148=Glyco_transf_6=PD(67.4=99.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAAGCTGCTGGAACACGG
R:
CTTTGTGGGCTCTCTTGGCAA
Band lengths:
253-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types