BtaEX6047054 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030319 | GBGT1
Description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:20460]
Coordinates
chr11:103182510-103184776:-
Coord C1 exon
chr11:103184741-103184776
Coord A exon
chr11:103183889-103184023
Coord C2 exon
chr11:103182510-103182947
Length
135 bp
Sequences
Splice sites
3' ss Seq
TCGGCCTCCTCTGCTGCCAGGCC
3' ss Score
6.9
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTCACAGTACCCTCAGCCCAAGCTGCTGGAGCAAAA
Seq A exon
GCCCACAGAGCTACTGACACTCACACCCTGGCTGGCGCCCATCGTCTCCGAGGGAACCTTTAACGCCGAGCTTCTGCATCACATCTACCAGCCACTGAACCTGACCATCGGGCTTACGGCGTTTGCTGTGGGAAA
Seq C2 exon
GTATACCCGGTTCGTCCAGCACTTCCTGGAGTCGGCCGAGCGGTTCTTCATGCAGGGGTACCGCGTGCACTACTACATCTTCACTCATGACCCCCAGGCCATTCCTCAGGTCCCACTGGGCCCTGGCCGCCGCCTCAGTGTCATCCCAGTCCCGGGGCCCTCCCAGTGGGAGGAGGCCTCCATGCGCCGGATGGAGGCCATCAGTGTGCACATCGCCAAGAGGGCGCACCGGGAGGTGGACTACCTCTTCTGCCTGGACGTGGACATGGCATTCCGGAACCCATGGGGCCCCGAGACCTTGGGGGACCTCGTGGCTGCCATCCACCCGGACTACTTCACCGTCCCCCGCCACCAGTTCCCCTATGAGCGCCGGCCTGTCTCCACCGCCTTCGTGGCGGATGGCGAGGGGGACTTCTACTATGGCAGGGCGGTCTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030319-'6-13,'6-11,7-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(3.7=100)
A:
PF034148=Glyco_transf_6=FE(13.8=100)
C2:
PF034148=Glyco_transf_6=FE(44.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGTACCCTCAGCCCAAG
R:
GATGTGCACACTGATGGCCTC
Band lengths:
249-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]