DreEX6010732 @ danRer10
Exon Skipping
Gene
ENSDARG00000019207 | abo
Description
ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) [Source:ZFIN;Acc:ZDB-GENE-081104-23]
Coordinates
chr5:24521253-24528806:-
Coord C1 exon
chr5:24528771-24528806
Coord A exon
chr5:24522476-24522610
Coord C2 exon
chr5:24521253-24521943
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTATTTTATTTTTTTAACAGCCC
3' ss Score
8.97
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
ACTCCTTTATCTGGGCTTCACCTCTGGATGGATTAA
Seq A exon
CCCATATAGCCAAGCTGAATTGACACCATGGTTAGCCCCAATTGTATGGGAGGGAACGTTTGATCCCAAACTGATTGATTCAATCTACAAAAAACAGAACATCACAGTAGCGACTACAGTCTTCGCTCTTGGCAA
Seq C2 exon
ATACACAGTGTTTCTTAAAGATTTCCTGGAGTCTGCAGAGCGCTATTACTTTGTTGGGTTTCGTGTGCACTATTATGTCTTCACCGATCACCCAGAACAGGTTCCTGTTGTGAAACTGGGTGTAGAACGTAAACTGACGGTGATGACAGTTAAAAGTTCTAACAGATGGCAGGAGATGACATTGCGGAGGATGGAGAGGGTGGAGAAACTGATTGAGAGCCGATTGGTGAAGGAAGCAGACTATGTTTTCAGCCTTGATGTGGATACAAAGTTCTACGGCCGCTGGGGAGCAGAGACTTTGGGTGATCTTATAGGTGTGATTCATCCTGGTTACTATCATACACGACGTGAGCAATTCCCTTATGAGCGAAGGCCTGAGTCTCAAGCGTTTATCCCTTATTCTGAAGGTGATTATTATTATTGTGGAGCTGTGCTTGGTGGTAAAGTGAAAGATGTACATGAGGTTGCTAAAACCTGCCGAGAGCAGCTGGACATCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019207-'4-4,'4-3,11-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(1.8=38.5)
A:
PF034148=Glyco_transf_6=FE(16.2=100)
C2:
PF034148=Glyco_transf_6=PD(81.7=98.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTTCACCTCTGGATGGAT
R:
TCCTTCACCAATCGGCTCTCA
Band lengths:
258-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]