MmuEX0003598 @ mm9
Exon Skipping
Gene
ENSMUSG00000030945 | Acsm2
Description
acyl-CoA synthetase medium-chain family member 2 [Source:MGI Symbol;Acc:MGI:2385289]
Coordinates
chr7:126724127-126732436:+
Coord C1 exon
chr7:126724127-126724250
Coord A exon
chr7:126726220-126726300
Coord C2 exon
chr7:126732335-126732436
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTGTCCTTGTCTCTCCACAGGGA
3' ss Score
13.54
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
Exon sequences
Seq C1 exon
TTACAAATTTCCACATCTGCATAGCTGCTTCAGTGGAGGAGAGACCCTTCTCCCAGAGACTCTGGAGAACTGGAAAGCCAAGACAGGACTGGAAATCCGAGAAATCTATGGCCAGACAGAAACG
Seq A exon
GGACTTATCTGCAGAGTTTCCAGGACAATGAAAGTCAAACCAGGCTACCTGGGAACAGCCTTTGCTCACTATGATGTACAG
Seq C2 exon
GTCATAGATGAGCAGGGCAATGTTCTGCCCCCTGGCAAGGAAGGAGACATAGCTATCAGGGTGAAGCCCATCTGGCCTATCGGCATGTTCTCTGGATATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030945-'10-15,'10-14,12-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.9=100)
A:
PF0050123=AMP-binding=FE(18.1=100)
C2:
PF0050123=AMP-binding=FE(22.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATAGCTGCTTCAGTGGAGG
R:
GGCTTCACCCTGATAGCTATGT
Band lengths:
174-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: