MmuEX0003604 @ mm10
Exon Skipping
Gene
ENSMUSG00000030972 | Acsm5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:MGI Symbol;Acc:MGI:2444086]
Coordinates
chr7:119526208-119528638:+
Coord C1 exon
chr7:119526208-119526437
Coord A exon
chr7:119527306-119527393
Coord C2 exon
chr7:119528419-119528638
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTGTTATCACTAGAGGAA
3' ss Score
1.37
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GAAACCCTGGCAGGGAGCTGCTTTCACCAGCTCACAGTGTCCTGACCCTCTGAAACTTGAAGCTGCTGACTTCTAACCCTGTTTTCTCCAGGCTGTGCTTGGGGCTAAAGCTCCCTGTCCCAATCCTGCCTTCATCGCTTCTGGGGAAATCTTCTCAGGAGCTTTTAGGTCTGCCTTGCTGCTGCAGTGAAACGCAGATGCCTTTTGTGTACCTCAGATTTTAAAACAAG
Seq A exon
GAATTTGCCCCAAGGGACTGAAACTGAAAGTGTCCCCAGGCTACAGATATCTCTGGGATCCTGTGAACATGCAGAGTCACACTCACAG
Seq C2 exon
GCAGAAGTTGATAGAAGTCATGAGGTTGTGGCTAAGAGGCCTGGCCTGCCAGGCTCTGAGGAGTTCCTGGGGAGTCTGCAGGATTCACACACAGCCACCACCTCCCCCGATCCCTGAGGTGGTAGCTACCTGGGAAGCCATCAGCCTGGGGAGGCAGCCAGTGCCCGAGTACTTCAACTTTGCTCATGATGTGTTGGATGTGTGGAGTCAGCTGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030972-'5-11,'5-10,6-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(0.5=3.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGCCTTCATCGCTTCTG
R:
CTCCCCAGGAACTCCTCAGAG
Band lengths:
182-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types