MmuEX0003604 @ mm9
Exon Skipping
Gene
ENSMUSG00000030972 | Acsm5
Description
acyl-CoA synthetase medium-chain family member 5 [Source:MGI Symbol;Acc:MGI:2444086]
Coordinates
chr7:126669818-126672152:+
Coord C1 exon
chr7:126669818-126669951
Coord A exon
chr7:126670818-126670907
Coord C2 exon
chr7:126671933-126672152
Length
90 bp
Sequences
Splice sites
3' ss Seq
CCCTGTTCTGTTATCACTAGAGG
3' ss Score
7.73
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GCTTGGGGCTAAAGCTCCCTGTCCCAATCCTGCCTTCATCGCTTCTGGGGAAATCTTCTCAGGAGCTTTTAGGTCTGCCTTGCTGCTGCAGTGAAACGCAGATGCCTTTTGTGTACCTCAGATTTTAAAACAAG
Seq A exon
AGGAATTTGCCCCAAGGGACTGAAACTGAAAGTGTCCCCAGGCTACAGATATCTCTGGGATCCTGTGAACATGCAGAGTCACACTCACAG
Seq C2 exon
GCAGAAGTTGATAGAAGTCATGAGGTTGTGGCTAAGAGGCCTGGCCTGCCAGGCTCTGAGGAGTTCCTGGGGAGTCTGCAGGATTCACACACAGCCACCACCTCCCCCGATCCCTGAGGTGGTAGCTACCTGGGAAGCCATCAGCCTGGGGAGGCAGCCAGTGCCCGAGTACTTCAACTTTGCTCATGATGTGTTGGATGTGTGGAGTCAGCTGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030972_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0050123=AMP-binding=PU(0.5=3.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGCCTTCATCGCTTCTG
R:
CTCCCCAGGAACTCCTCAGAG
Band lengths:
182-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: