MmuEX0003665 @ mm10
Exon Skipping
Gene
ENSMUSG00000026836 | Acvr1
Description
activin A receptor, type 1 [Source:MGI Symbol;Acc:MGI:87911]
Coordinates
chr2:58500484-58537873:-
Coord C1 exon
chr2:58537778-58537873
Coord A exon
chr2:58516024-58516300
Coord C2 exon
chr2:58500484-58500557
Length
277 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTCTTCCTCTGCAGCCT
3' ss Score
11.65
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GAACAAAGGAGCTGCCCCCGTGTCACCCAGCCCTTCAGTGGAAGTCTGGAAAAGGAACAGAGGTGATATTGCAGTGGATGAGCAGAGAGAAGCCGG
Seq A exon
CCTCTGGTGCTCTTGAGCTGGTCTGCCCATAGGGAGCCTGCTGGGAGAAGGTACAGCTTCCGGAAGACTCCTCCCGGAGCGCCTCTCCCATCCTCCTCTCCCTTGGAGCAGTCAGTACCTCTCTGCTGGAGGATCTGGGCTGGGTGTGCCGGGAGCTGGCTTTAACTGTAGCCCTGTCAGGCTTTCCCCGGACCTCGCGGAAGAGCGTCACCAGCCCCCACGGCTTTCCAACACATCACCTCTTTTCATGCCGTTTGGCACAGATCGAATCTACAGG
Seq C2 exon
TTATACAATGGTCGATGGAGTAATGATCCTTCCTGTGCTAATGATGATGGCTTTCCCTTCCCCGAGTGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026836_MULTIEX2-1/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAAAGGAGCTGCCCCC
R:
CCACACTCGGGGAAGGGAAAG
Band lengths:
167-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types