RnoEX0006457 @ rn6
Exon Skipping
Gene
ENSRNOG00000005033 | Acvr1
Description
activin A receptor type 1 [Source:RGD Symbol;Acc:620200]
Coordinates
chr3:44483842-44522930:-
Coord C1 exon
chr3:44522892-44522930
Coord A exon
chr3:44500847-44501118
Coord C2 exon
chr3:44483842-44483915
Length
272 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTCTCCTTCTGCAGCAT
3' ss Score
11.71
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CCGAGGTGCTACTGCAGTGGATGAGTAGAGAAGAGTCTG
Seq A exon
CATCCAGTGCTGGTGAGCTTGTCTGGCTATAGGGAGCCTGCTGGGGGAAACTTACAGCTTCAGAAGACTCCTGGAGAGCCTCTCCCTCCACACTCTCCCTTTGAGCAGTCAGTGCCTCTCTGCTGGAGAACCTGTGCTGGGTGTGCCCCAGAGCTGGCTTTGACTGTAGCCTGTCAGGCTCTCCCTGGACCTCACGGAACAGCATTGCCAGCCACACGGCTTCCAACAAATCACCTCTTTTCATGCTGTTTGGCACAGATCGAATCTACAGG
Seq C2 exon
TTATACAATGGTCGATGGAGCAATGATCCTTTCTGTGCTAATGATGATGGCTCTCCCTTCCCCGAGTATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005033_MULTIEX2-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.109
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]