MmuEX0003911 @ mm10
Exon Skipping
Gene
ENSMUSG00000043822 | Adamtsl5
Description
ADAMTS-like 5 [Source:MGI Symbol;Acc:MGI:1913798]
Coordinates
chr10:80345513-80347625:-
Coord C1 exon
chr10:80347557-80347625
Coord A exon
chr10:80347282-80347337
Coord C2 exon
chr10:80345513-80345703
Length
56 bp
Sequences
Splice sites
3' ss Seq
CGCGGGTTTTCACTGCACAGATG
3' ss Score
7.15
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
Exon sequences
Seq C1 exon
ATCCTCTAGGCACCGCAGCCCGCAGCTCTGGCAGATGAGACCATGACCCACGTGTTGGCAGGAGGCCAG
Seq A exon
ATGGGGAAACCGAGGCCTGGAGAAATGGAATGGTTGGTTCCTGGCCACCCAGGAAG
Seq C2 exon
AGACAAGAGGACCCAGAGAGGTTTGGCTACCATCGAACACACAGCCAGCCAGGGCTGAGATGGCAATTCACCCTGACCCTGCTCTTCACTGCCTCTTGGTAACCCTGTGCTCCCTCAAACCCCGCCTCTTCCCGCTTCTTCCGTTCTTGCTGTGGACTCTCCTGAGCTGTGATTTGAGGGGTGCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043822_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTGGCAGATGAGACCAT
R:
CAAGAGGCAGTGAAGAGCAGG
Band lengths:
144-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types