HsaEX1002766 @ hg38
Exon Skipping
Gene
ENSG00000185761 | ADAMTSL5
Description
ADAMTS like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr19:1510845-1513189:-
Coord C1 exon
chr19:1512963-1513189
Coord A exon
chr19:1511625-1511717
Coord C2 exon
chr19:1510845-1511160
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCTTCCGCAGGGTGTCACAGAAT
3' ss Score
-0.8
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
CGCTCGCGTCCGCCGGGCAGTCCCCTGCCGCAGATCCGCGCCCGCCGCGCGAGGGCGCCCGGGGCCGCCGCCCCTCCTGACCCGGGCCTGGGCGCGCCTGCGGAGGCCGCGGTGGGAGGGACCGTCCCAGGCTCCCCACCCCGCCCAGCACCTTGGGCCCCGCCGCTTCCGCTCGCCCTGGGGCCGCTCAGGGAGCCGGGACGCGCTGCCTGGGCTCCGCGCAGCCG
Seq A exon
AATCATGGACTGAGTCCACTTGGCCCCCACTGCACAGATGGGGAAACTGAGGCCTGGGAGAGTGGAGTGGCTGGCCTCAGGCCACACGGAAAG
Seq C2 exon
ATGACATTCTGAGTTCTTCCTCTCCATACCGGGCTCCACGTCTCCTGTCTTCTTTACCTGATCCACAGGACCCCTCAACTTTCCTGTAAGGGAGGCTCTATTACCCCGTTTTTCAGAGACGAGAGGTAGGGCTCAGAGAGGTTTAGTTACTTTCCAAGATCACACAGCCAGTCAGGGCAGAGCCGGGACACAACCCTGTGTCTCTGGCGGTGGCTCTATGGACTCGGCCCCTCTGTTCCCCAGGCCCCACCTCTTCCAGAACCTCCTGCTCTTCCTGTGGGCCCTGCTGAACTGTGGTTTGGGGGTCAGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185761-'1-6,'1-5,2-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCCTGCCGCAGATCC
R:
CGGTATGGAGAGGAAGAACTCA
Band lengths:
239-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains