HsaINT1002819 @ hg38
Intron Retention
Gene
ENSG00000185761 | ADAMTSL5
Description
ADAMTS like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr19:1510845-1513189:-
Coord C1 exon
chr19:1512963-1513189
Coord A exon
chr19:1511161-1512962
Coord C2 exon
chr19:1510845-1511160
Length
1802 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
AACAACAATAATAATTGCAGATG
3' ss Score
3.6
Exon sequences
Seq C1 exon
CGCTCGCGTCCGCCGGGCAGTCCCCTGCCGCAGATCCGCGCCCGCCGCGCGAGGGCGCCCGGGGCCGCCGCCCCTCCTGACCCGGGCCTGGGCGCGCCTGCGGAGGCCGCGGTGGGAGGGACCGTCCCAGGCTCCCCACCCCGCCCAGCACCTTGGGCCCCGCCGCTTCCGCTCGCCCTGGGGCCGCTCAGGGAGCCGGGACGCGCTGCCTGGGCTCCGCGCAGCCG
Seq A exon
GTAAGTCCATCTGCCTATCCTCCCACTTTCTCCGGGGGAAACTGAGGCCCAGAGGTGCGGCTTGCCTTGAGATCCCTCCGCCAGTCCGGGCTGCAGCCCACACGGGGAGGGGAGAGCCTTGATTCTGGGCAGGGCCCATTGAGGAGGGGGTAGGGTGGTCCTTGTAGCCCCCCACTTTTCACCACCTAGACCCCCACTCCTCAAACCAGGCTTAGAGTCCGGTGGGGGTGGTCAGAAGGTCAAGCCCCCTCCCCCTGTTTTTTTTGGTTGGTTGGTTGTTTTTGAGACTGAGTCTCACTATGTCGCCCAGGCTGGAGTGCATTGGCCCCATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCGATTCTCCTGCCTTAGCCTCCCAAGTAGCTGGGATTACAGGTGTGCACCACCACACCGGGCTAATTTTTGTGTTTTAGTACAGATGGGGTTTTACCATGTTGGTCAGGCTGGTCCCAAACTTCTGACCTCAGGTGATCCGCCTGTCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCTGGCCCCCCTCCCCTTGTTTTAAGTTTCTGGTGCAGACTTCTTCCTGCTTCCTGGGCCAGCCCAGGCTCTAGGCTCAGAGAGGGGCACGGATGCAGCAGACCACACAGCTGTCTCAGTACCTAGAGATACCCAGGACCCTAGACCCTTGGTGCCTCAGAAGTCCAAATGCTGGAGCCAGGGAAACAGGGTCCAGGTGGGACCCAGCCTCTTCCCCAGCTGGTGCCCGGGCCGGGGCTCACCCACCTGCCTTCAGGCTCTGCTGGCAGCAGGACGCCCTGGCTCACTTGGCGGCTGCTTCCCTTCCCCCCTCTTTCCCCCTGCAGGCTGGGGTCATGAGGAGGGTGTGGATGGCAAGTGACTTCATCCCTGCCCTGACAGGATGGAGAAACTAAGGCCCAGAGAGGCAGTCAGCCTCCTCCCCTTCCCTGCTCCAGCCTCAGCAGTGGCCCCTTCCCTCCACGGGCTGCCCCGGAGCTCAGTCCCACCCCCTCCGCCGATGAGGCCATGAGGCACCGAACGGACCTGGGCCAGGTCACCCCCTCCCTGTCCCATCCCCAATCCGGGGGACTCCCTGCTGTCTGGGAGCTGAGGGAGCCCTGGGGCCGGGGTGCAGCTGAGGGCCTCTTCTAGGGACCCAACTCCTGATCCAGCCCCTGCCGGCCGCACCTTCCGCAGGGTGTCACAGAATCATGGACTGAGTCCACTTGGCCCCCACTGCACAGATGGGGAAACTGAGGCCTGGGAGAGTGGAGTGGCTGGCCTCAGGCCACACGGAAAGGTAGAAGCAGTGATGGTGGGGAGGGCGGGGAGGGGGCCCCAGCCCTAGGAGGCACCTGTGTACTATTTTTGAATGATCCCTCCAATCATCAAGCATCGATTAAGCACCTACTGTCTGCATTATAGCACAATACACATATCAATAATATTGTAGGCTGGGTGCAGTGGCTCATGCCTATAATCCTAGCACTTTGGGAGGCCAAAGCAGGTGGATCACTTCAGGTCAGAAGGTTGAGACCAACCTGGCCAAGATGGTGAAACCCTGTCTCCACTAAAACGGCAAAAATTAGTCCGGCGTGGTGGCAGGCACCTGTAATCCTAGCTTCTCGGGATGCTGAGGCAGGAGAATTACTTGAACCGGGGAGGGTTGCAGTGAGCCGAGATCGCACCCCTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAACAAACTAACTAACAACAATAATAATTGCAG
Seq C2 exon
ATGACATTCTGAGTTCTTCCTCTCCATACCGGGCTCCACGTCTCCTGTCTTCTTTACCTGATCCACAGGACCCCTCAACTTTCCTGTAAGGGAGGCTCTATTACCCCGTTTTTCAGAGACGAGAGGTAGGGCTCAGAGAGGTTTAGTTACTTTCCAAGATCACACAGCCAGTCAGGGCAGAGCCGGGACACAACCCTGTGTCTCTGGCGGTGGCTCTATGGACTCGGCCCCTCTGTTCCCCAGGCCCCACCTCTTCCAGAACCTCCTGCTCTTCCTGTGGGCCCTGCTGAACTGTGGTTTGGGGGTCAGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185761:ENST00000330475:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCCCTGCCGCAGATC
R:
GAGCCCTACCTCTCGTCTCTG
Band lengths:
343-2145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains