MmuINT0011582 @ mm9
Intron Retention
Gene
ENSMUSG00000043822 | Adamtsl5
Description
ADAMTS-like 5 [Source:MGI Symbol;Acc:MGI:1913798]
Coordinates
chr10:79810302-79811191:-
Coord C1 exon
chr10:79811101-79811191
Coord A exon
chr10:79810601-79811100
Coord C2 exon
chr10:79810302-79810600
Length
500 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
CCTCCTTACCCCTTTTTCAGGTA
3' ss Score
12.45
Exon sequences
Seq C1 exon
CAGTCCCGCACTTTGGGGCCCCGCCGCTTCCGCCAGTCCCCGGGGCGTCCCGGGGAAACTTGGACGTATTGCCTTGGGCTCTCAGCAGATG
Seq A exon
GTAAGTCCCTCTTCCCATCCTGCCACTATTCCACCCGGTGTGGCGGCGGGGATGAGATTGGTTTCTTTCCCTGCTCGGAGCGAAAGCAGCAATCCCTAGGATGGTGGGTGAGTTTGGGGGTCGCACTTCCTACGGGATGGGACTGAAACTCAGGAGACCGACACCCCAGTGACTGGTGCACCAATGCGGGAGAGGGATGCAGTGCTAGATGCGGTGCTCGGGAGAGGGCATTGACAGACATGGGTAGGAGCCCCCCTCACGAAGGGGGTTATGAGATGGCCTTCCCCAGCCTCCTTCTTCCTTCCTTCCCGGGACAGCCCAGTTTCTGGGCCCGCAGAAGGAAGGGTCCGGCGAGTGTCTTGAAGCAGTTCCCGTGAGTTTCCAATTTACAGCCATCTCGGTCCCAAGGTGTCCTAAAGGACATCAGATTGGCTGACAACCGGAGAGACCCTGGTTCCAGCCGGGCCGGGGTACTTTTGTCCTCCTTACCCCTTTTTCAG
Seq C2 exon
GTACCTGGACCCTGTGGGCTGCAGATCTTTGAGAGCCCGTGTGCCCTTCAGAGAGCCTGGCCCGGGCCCAGAAGGGACTCACTTCATCTTGGTTCCCTTCCCTCCTGGCTGGTCTTGCCAGGCTGGGATCACGAGGAGGAGGGCGTCGGCTGAGAATGACTTCATCCGGTCTCTACAGTTGGGGAAACTGAGACCTCCACTCAGCCCCACCCTGCTCTTCTTGTCCGCAGATCCTCTAGGCACCGCAGCCCGCAGCTCTGGCAGATGAGACCATGACCCACGTGTTGGCAGGAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043822-Adamtsl5:NM_001113548:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCCGGGGAAACTTGGA
R:
GCCTCCTGCCAACACGTG
Band lengths:
342-842
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: