HsaINT0004364 @ hg19
Intron Retention
Gene
ENSG00000185761 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:27912]
Coordinates
chr19:1510844-1513188:-
Coord C1 exon
chr19:1512962-1513188
Coord A exon
chr19:1511160-1512961
Coord C2 exon
chr19:1510844-1511159
Length
1802 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
AACAACAATAATAATTGCAGATG
3' ss Score
3.6
Exon sequences
Seq C1 exon
CGCTCGCGTCCGCCGGGCAGTCCCCTGCCGCAGATCCGCGCCCGCCGCGCGAGGGCGCCCGGGGCCGCCGCCCCTCCTGACCCGGGCCTGGGCGCGCCTGCGGAGGCCGCGGTGGGAGGGACCGTCCCAGGCTCCCCACCCCGCCCAGCACCTTGGGCCCCGCCGCTTCCGCTCGCCCTGGGGCCGCTCAGGGAGCCGGGACGCGCTGCCTGGGCTCCGCGCAGCCG
Seq A exon
GTAAGTCCATCTGCCTATCCTCCCACTTTCTCCGGGGGAAACTGAGGCCCAGAGGTGCGGCTTGCCTTGAGATCCCTCCGCCAGTCCGGGCTGCAGCCCACACGGGGAGGGGAGAGCCTTGATTCTGGGCAGGGCCCATTGAGGAGGGGGTAGGGTGGTCCTTGTAGCCCCCCACTTTTCACCACCTAGACCCCCACTCCTCAAACCAGGCTTAGAGTCCGGTGGGGGTGGTCAGAAGGTCAAGCCCCCTCCCCCTGTTTTTTTTGGTTGGTTGGTTGTTTTTGAGACTGAGTCTCACTATGTCGCCCAGGCTGGAGTGCATTGGCCCCATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCGATTCTCCTGCCTTAGCCTCCCAAGTAGCTGGGATTACAGGTGTGCACCACCACACCGGGCTAATTTTTGTGTTTTAGTACAGATGGGGTTTTACCATGTTGGTCAGGCTGGTCCCAAACTTCTGACCTCAGGTGATCCGCCTGTCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCTGGCCCCCCTCCCCTTGTTTTAAGTTTCTGGTGCAGACTTCTTCCTGCTTCCTGGGCCAGCCCAGGCTCTAGGCTCAGAGAGGGGCACGGATGCAGCAGACCACACAGCTGTCTCAGTACCTAGAGATACCCAGGACCCTAGACCCTTGGTGCCTCAGAAGTCCAAATGCTGGAGCCAGGGAAACAGGGTCCAGGTGGGACCCAGCCTCTTCCCCAGCTGGTGCCCGGGCCGGGGCTCACCCACCTGCCTTCAGGCTCTGCTGGCAGCAGGACGCCCTGGCTCACTTGGCGGCTGCTTCCCTTCCCCCCTCTTTCCCCCTGCAGGCTGGGGTCATGAGGAGGGTGTGGATGGCAAGTGACTTCATCCCTGCCCTGACAGGATGGAGAAACTAAGGCCCAGAGAGGCAGTCAGCCTCCTCCCCTTCCCTGCTCCAGCCTCAGCAGTGGCCCCTTCCCTCCACGGGCTGCCCCGGAGCTCAGTCCCACCCCCTCCGCCGATGAGGCCATGAGGCACCGAACGGACCTGGGCCAGGTCACCCCCTCCCTGTCCCATCCCCAATCCGGGGGACTCCCTGCTGTCTGGGAGCTGAGGGAGCCCTGGGGCCGGGGTGCAGCTGAGGGCCTCTTCTAGGGACCCAACTCCTGATCCAGCCCCTGCCGGCCGCACCTTCCGCAGGGTGTCACAGAATCATGGACTGAGTCCACTTGGCCCCCACTGCACAGATGGGGAAACTGAGGCCTGGGAGAGTGGAGTGGCTGGCCTCAGGCCACACGGAAAGGTAGAAGCAGTGATGGTGGGGAGGGCGGGGAGGGGGCCCCAGCCCTAGGAGGCACCTGTGTACTATTTTTGAATGATCCCTCCAATCATCAAGCATCGATTAAGCACCTACTGTCTGCATTATAGCACAATACACATATCAATAATATTGTAGGCTGGGTGCAGTGGCTCATGCCTATAATCCTAGCACTTTGGGAGGCCAAAGCAGGTGGATCACTTCAGGTCAGAAGGTTGAGACCAACCTGGCCAAGATGGTGAAACCCTGTCTCCACTAAAACGGCAAAAATTAGTCCGGCGTGGTGGCAGGCACCTGTAATCCTAGCTTCTCGGGATGCTGAGGCAGGAGAATTACTTGAACCGGGGAGGGTTGCAGTGAGCCGAGATCGCACCCCTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAACAAACTAACTAACAACAATAATAATTGCAG
Seq C2 exon
ATGACATTCTGAGTTCTTCCTCTCCATACCGGGCTCCACGTCTCCTGTCTTCTTTACCTGATCCACAGGACCCCTCAACTTTCCTGTAAGGGAGGCTCTATTACCCCGTTTTTCAGAGACGAGAGGTAGGGCTCAGAGAGGTTTAGTTACTTTCCAAGATCACACAGCCAGTCAGGGCAGAGCCGGGACACAACCCTGTGTCTCTGGCGGTGGCTCTATGGACTCGGCCCCTCTGTTCCCCAGGCCCCACCTCTTCCAGAACCTCCTGCTCTTCCTGTGGGCCCTGCTGAACTGTGGTTTGGGGGTCAGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185761-ADAMTSL5:NM_213604:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCCCTGCCGCAGATC
R:
GAGCCCTACCTCTCGTCTCTG
Band lengths:
343-2145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)