BtaINT0009043 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MXP8]
Coordinates
chr7:45566136-45566823:-
Coord C1 exon
chr7:45566602-45566823
Coord A exon
chr7:45566209-45566601
Coord C2 exon
chr7:45566136-45566208
Length
393 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
TGCACCCTCTGCCCCCCTAGACC
3' ss Score
9.87
Exon sequences
Seq C1 exon
GAGCTCCCTGCTGTCCCACATCTGGGAGCTGAGGGAACCCTGGAGGCTGAAGGCCTGCCTGTGAGGGGGTGCCTCTGCCAGGCACCAGCCCCAGCTCCCACCAGCCACACCCTCTGCAAGGTCTCATAGAATACTGGACAGAACCCAGCTGGTCCCCATTGCACAGATGGGGAAACTGAGGCCAGAGAAAGAGGAGCACCTGGCCCCTTGCCATACCAGAAG
Seq A exon
GTAGGCGCAAAGATGGTGGGGAGAGTGGGGAAGGACCTAGGACCCTAGAGAGACCCGTGCACATCCCTGGAATGAATGATTCCTTCCATGATGAGACACTAAATAAGCACCTACTGTGTGCATCATGACAGTAAACAACCAATAATAATAATTTTTACATTTTCCTTCTCCATACCAGGCTCTGTGCCTCCCATTTTTCTCACCTAATCTGACGGAGCCCTTAAAACTTTCCTATTAGGTGGGCTGTATTATGACTTCATTTTTCAGAGATGAGAAGGGAAATTCAGAGAGGTTGAGTTACTATCTGAAATCACACAGCCAGTCGGGACAGAGCTGGGGTTCAACCCCTGGCTTGCTGGCACCCCCACTGCCGTGCACCCTCTGCCCCCCTAG
Seq C2 exon
ACCCCGCTCCCTCTGGAACCTCTTGCTCCTGCTGTGGACCTTCCTGAATTGTGGTTTGGGGGGCAACGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046263:ENSBTAT00000065686:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGCTGTCCCACATCT
R:
CCCCCAAACCACAATTCAGGA
Band lengths:
281-674
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]