BtaEX0001454 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MXP8]
Coordinates
chr7:45565937-45566823:-
Coord C1 exon
chr7:45566602-45566823
Coord A exon
chr7:45566136-45566208
Coord C2 exon
chr7:45565937-45566028
Length
73 bp
Sequences
Splice sites
3' ss Seq
TGCACCCTCTGCCCCCCTAGACC
3' ss Score
9.87
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GAGCTCCCTGCTGTCCCACATCTGGGAGCTGAGGGAACCCTGGAGGCTGAAGGCCTGCCTGTGAGGGGGTGCCTCTGCCAGGCACCAGCCCCAGCTCCCACCAGCCACACCCTCTGCAAGGTCTCATAGAATACTGGACAGAACCCAGCTGGTCCCCATTGCACAGATGGGGAAACTGAGGCCAGAGAAAGAGGAGCACCTGGCCCCTTGCCATACCAGAAG
Seq A exon
ACCCCGCTCCCTCTGGAACCTCTTGCTCCTGCTGTGGACCTTCCTGAATTGTGGTTTGGGGGGCAACGCTCAG
Seq C2 exon
GGTCCGGGTGAGTGGACGCCATGGGGTTCCTGGAGTCGCTGTTCCAGCTCTTGCGGGCGAGGGCTCTCAGTGCGCAGCCGGAGATGTATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046263_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009014=TSP_1=PU(52.1=80.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCACACCCTCTGCAAG
R:
TGGAACAGCGACTCCAGGAA
Band lengths:
167-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development