MmuEX6049824 @ mm10
Exon Skipping
Gene
ENSMUSG00000043822 | Adamtsl5
Description
ADAMTS-like 5 [Source:MGI Symbol;Acc:MGI:1913798]
Coordinates
chr10:80345322-80347625:-
Coord C1 exon
chr10:80347557-80347625
Coord A exon
chr10:80345513-80345703
Coord C2 exon
chr10:80345322-80345413
Length
191 bp
Sequences
Splice sites
3' ss Seq
GTTACCTCAATTGTTTTTAGAGA
3' ss Score
5.63
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATCCTCTAGGCACCGCAGCCCGCAGCTCTGGCAGATGAGACCATGACCCACGTGTTGGCAGGAGGCCAG
Seq A exon
AGACAAGAGGACCCAGAGAGGTTTGGCTACCATCGAACACACAGCCAGCCAGGGCTGAGATGGCAATTCACCCTGACCCTGCTCTTCACTGCCTCTTGGTAACCCTGTGCTCCCTCAAACCCCGCCTCTTCCCGCTTCTTCCGTTCTTGCTGTGGACTCTCCTGAGCTGTGATTTGAGGGGTGCTGCCCAG
Seq C2 exon
GGTCCGGGAGAGTGGACGCCCTGGGGGTCTTGGAGCAGGTGTTCCAGCTCTTGTGGTCGGGGCGTCTCAGTGCGCAGACGCCAATGTGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043822-'11-10,'11-7,14-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0009014=TSP_1=PU(52.1=80.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTCTAGGCACCGCAGC
R:
GGACACATTGGCGTCTGCG
Band lengths:
160-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types