RnoEX6030541 @ rn6
Exon Skipping
Gene
ENSRNOG00000033787 | Adamtsl5
Description
ADAMTS-like 5 [Source:RGD Symbol;Acc:1305607]
Coordinates
chr7:12230180-12231928:+
Coord C1 exon
chr7:12230180-12230248
Coord A exon
chr7:12231544-12231737
Coord C2 exon
chr7:12231837-12231928
Length
194 bp
Sequences
Splice sites
3' ss Seq
TTTACCTCATTTCTTTTTAGAGA
3' ss Score
9.35
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ACCCTCTGGGCACCGCAGCCCGCACTCCTGGCTGATGAGACCATGACGCACATGTTGGCAGGAGGCCAG
Seq A exon
AGACAAGAGGACCCAGAGAGGTTTGGCTACCATCGAAGACCACACAGTCAGCCAGGGCTGAGATGGCAGTTCACTCCGATTCTGCTGATCACTGCCTCTTGGGAACCCAGTGCTCCCTCAGACCCCGCCTCTTCCCGCCTCTTCTGTTCTTGCTGTGGATTCTCCTGAGCTGTGATTTGAGGGGTGCTGCTCAG
Seq C2 exon
GGTCCGGGAGAGTGGACGCTCTGGGGGTCTTGGAGCCGGTGTTCCAGCTCGTGTGGTCGGGGCGTCTCAGTGCGCAGACGCCACTGCGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033787-'8-5,'8-3,11-5=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0009014=TSP_1=PU(52.1=80.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCACTCCTGGCTGATGAG
R:
CGTCTGCGCACTGAGACG
Band lengths:
130-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]