BtaALTA0001111-2/2 @ bosTau6
Alternative 3'ss
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MXP8]
Coordinates
chr7:45565937-45566208:-
Coord C1 exon
chr7:45566136-45566208
Coord A exon
chr7:45566029-45566031
Coord C2 exon
chr7:45565937-45566028
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TGTGACTCTCTCTCCCCAAGTAG
3' ss Score
4.56
Exon sequences
Seq C1 exon
ACCCCGCTCCCTCTGGAACCTCTTGCTCCTGCTGTGGACCTTCCTGAATTGTGGTTTGGGGGGCAACGCTCAG
Seq A exon
TAG
Seq C2 exon
GGTCCGGGTGAGTGGACGCCATGGGGTTCCTGGAGTCGCTGTTCCAGCTCTTGCGGGCGAGGGCTCTCAGTGCGCAGCCGGAGATGTATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046263-1-5,1-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009014=TSP_1=PU(52.1=80.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTCTTGCTCCTGCTGTG
R:
TGGAACAGCGACTCCAGGAA
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development