MmuALTA0001189-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000043822 | Adamtsl5
Description
ADAMTS-like 5 [Source:MGI Symbol;Acc:MGI:1913798]
Coordinates
chr10:79808067-79808448:-
Coord C1 exon
chr10:79808258-79808448
Coord A exon
chr10:79808159-79808161
Coord C2 exon
chr10:79808067-79808158
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCCTACTCTCTGCCATCAAGTAG
3' ss Score
0.47
Exon sequences
Seq C1 exon
AGACAAGAGGACCCAGAGAGGTTTGGCTACCATCGAACACACAGCCAGCCAGGGCTGAGATGGCAATTCACCCTGACCCTGCTCTTCACTGCCTCTTGGTAACCCTGTGCTCCCTCAAACCCCGCCTCTTCCCGCTTCTTCCGTTCTTGCTGTGGACTCTCCTGAGCTGTGATTTGAGGGGTGCTGCCCAG
Seq A exon
TAG
Seq C2 exon
GGTCCGGGAGAGTGGACGCCCTGGGGGTCTTGGAGCAGGTGTTCCAGCTCTTGTGGTCGGGGCGTCTCAGTGCGCAGACGCCAATGTGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043822-3-7,3-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009014=TSP_1=PU(52.1=80.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTCTTGCTGTGGACTCTCC
R:
CTGGAACACCTGCTCCAAGAC
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: