MmuEX0003910 @ mm9
Exon Skipping
Gene
ENSMUSG00000043822 | Adamtsl5
Description
ADAMTS-like 5 [Source:MGI Symbol;Acc:MGI:1913798]
Coordinates
chr10:79807788-79808448:-
Coord C1 exon
chr10:79808258-79808448
Coord A exon
chr10:79808067-79808158
Coord C2 exon
chr10:79807788-79807848
Length
92 bp
Sequences
Splice sites
3' ss Seq
TACTCTCTGCCATCAAGTAGGGT
3' ss Score
2.69
5' ss Seq
CCGGTAACC
5' ss Score
5.28
Exon sequences
Seq C1 exon
AGACAAGAGGACCCAGAGAGGTTTGGCTACCATCGAACACACAGCCAGCCAGGGCTGAGATGGCAATTCACCCTGACCCTGCTCTTCACTGCCTCTTGGTAACCCTGTGCTCCCTCAAACCCCGCCTCTTCCCGCTTCTTCCGTTCTTGCTGTGGACTCTCCTGAGCTGTGATTTGAGGGGTGCTGCCCAG
Seq A exon
GGTCCGGGAGAGTGGACGCCCTGGGGGTCTTGGAGCAGGTGTTCCAGCTCTTGTGGTCGGGGCGTCTCAGTGCGCAGACGCCAATGTGTCCG
Seq C2 exon
ACTTCCCGGAGAGGAACTTTGTTGGGGCGACAGCCATGAATACCGGGTGTGCCAGCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043822_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=PU(52.1=80.6)
C2:
PF0009014=TSP_1=FE(41.7=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATTCACCCTGACCCTGCTC
R:
CACCCGGTATTCATGGCTGTC
Band lengths:
177-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types