BtaEX6040353 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MXP8]
Coordinates
chr7:45565644-45566208:-
Coord C1 exon
chr7:45566136-45566208
Coord A exon
chr7:45565937-45566028
Coord C2 exon
chr7:45565644-45565704
Length
92 bp
Sequences
Splice sites
3' ss Seq
GACTCTCTCTCCCCAAGTAGGGT
3' ss Score
6.89
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
Exon sequences
Seq C1 exon
ACCCCGCTCCCTCTGGAACCTCTTGCTCCTGCTGTGGACCTTCCTGAATTGTGGTTTGGGGGGCAACGCTCAG
Seq A exon
GGTCCGGGTGAGTGGACGCCATGGGGTTCCTGGAGTCGCTGTTCCAGCTCTTGCGGGCGAGGGCTCTCAGTGCGCAGCCGGAGATGTATCCG
Seq C2 exon
GTTTCCAAGGGAAGAGCTGTGCTGGGGGGACACCCATGAGTACCGCCTCTGCCAGCAGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046263-'1-7,'1-5,2-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=PU(52.1=80.6)
C2:
PF0009014=TSP_1=FE(41.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCCCTCTGGAACCTCTT
R:
CTGCTGGCAGAGGCGGTA
Band lengths:
127-219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]