RnoEX0006946 @ rn6
Exon Skipping
Gene
ENSRNOG00000033787 | Adamtsl5
Description
ADAMTS-like 5 [Source:RGD Symbol;Acc:1305607]
Coordinates
chr7:12231544-12232214:+
Coord C1 exon
chr7:12231544-12231737
Coord A exon
chr7:12231837-12231928
Coord C2 exon
chr7:12232154-12232214
Length
92 bp
Sequences
Splice sites
3' ss Seq
TCCTTTCTGCCATCAAGTAGGGT
3' ss Score
4.47
5' ss Seq
CCGGTAAAC
5' ss Score
4.81
Exon sequences
Seq C1 exon
AGACAAGAGGACCCAGAGAGGTTTGGCTACCATCGAAGACCACACAGTCAGCCAGGGCTGAGATGGCAGTTCACTCCGATTCTGCTGATCACTGCCTCTTGGGAACCCAGTGCTCCCTCAGACCCCGCCTCTTCCCGCCTCTTCTGTTCTTGCTGTGGATTCTCCTGAGCTGTGATTTGAGGGGTGCTGCTCAG
Seq A exon
GGTCCGGGAGAGTGGACGCTCTGGGGGTCTTGGAGCCGGTGTTCCAGCTCGTGTGGTCGGGGCGTCTCAGTGCGCAGACGCCACTGCGTCCG
Seq C2 exon
ACTTCCTGAGGAGGAACTTTGCTGGGGGGACAGTCATGAATACCGGGTGTGCCAGCTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033787_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=PU(52.1=80.6)
C2:
PF0009014=TSP_1=FE(41.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGATCACTGCCTCTTGG
R:
CTGGCACACCCGGTATTCATG
Band lengths:
168-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]