DreEX6007268 @ danRer10
Exon Skipping
Gene
ENSDARG00000052118 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr7:50231797-50240937:-
Coord C1 exon
chr7:50240865-50240937
Coord A exon
chr7:50233961-50234112
Coord C2 exon
chr7:50231797-50231857
Length
152 bp
Sequences
Splice sites
3' ss Seq
CATTGTGTATATATTTGCAGTCA
3' ss Score
6.01
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GAAACTGTCTCTGTGCCAGGCTCTTGCCCTCGTAACACTGCTGCTGTCTCCAGGTGTCTTGTCATCTCCGCCG
Seq A exon
TCATCCAGACGAGTAGAGCTGGGAGGCGAAGGGCTGCAAATGCGAAGCCAAATGCATTTCATGAATGAGTGGGCCTCATGGGGCGGCTGGTCCGTGTGTTCGCGCTCCTGTGGGGGAGGAGCCTCTGTCCGTACACGCACCTGCATGACCAG
Seq C2 exon
AAATCTGGTTGGAGGGCCGTGCCCTGGTGACACCCGGCAGTATAAGATTTGTAACTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052118-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.137 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=PU(53.1=51.0)
C2:
PF0009014=TSP_1=FE(40.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACTGTCTCTGTGCCAGGC
R:
GAGTTACAAATCTTATACTGCCGGGT
Band lengths:
130-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]