HsaEX6091574 @ hg19
Exon Skipping
Gene
ENSG00000185761 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:27912]
Coordinates
chr19:1510367-1510916:-
Coord C1 exon
chr19:1510844-1510916
Coord A exon
chr19:1510638-1510729
Coord C2 exon
chr19:1510367-1510427
Length
92 bp
Sequences
Splice sites
3' ss Seq
GCCTCTGTCTCCCCAAGTAGGGT
3' ss Score
7.71
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GCCCCACCTCTTCCAGAACCTCCTGCTCTTCCTGTGGGCCCTGCTGAACTGTGGTTTGGGGGTCAGTGCTCAG
Seq A exon
GGTCCGGGCGAGTGGACCCCGTGGGTGTCCTGGACCCGCTGCTCCAGCTCCTGCGGGCGTGGCGTCTCTGTGCGCAGCCGGCGCTGCCTCCG
Seq C2 exon
GCTTCCTGGGGAAGAACCGTGCTGGGGAGACTCCCATGAGTACCGCCTCTGCCAGTTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185761-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=PU(52.1=80.6)
C2:
PF0009014=TSP_1=FE(41.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTCTTCCAGAACCTCCT
R:
AACTGGCAGAGGCGGTACTC
Band lengths:
127-219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)