HsaEX6091574 @ hg38
Exon Skipping
Gene
ENSG00000185761 | ADAMTSL5
Description
ADAMTS like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr19:1510368-1511160:-
Coord C1 exon
chr19:1510845-1511160
Coord A exon
chr19:1510639-1510730
Coord C2 exon
chr19:1510368-1510428
Length
92 bp
Sequences
Splice sites
3' ss Seq
GCCTCTGTCTCCCCAAGTAGGGT
3' ss Score
7.71
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
ATGACATTCTGAGTTCTTCCTCTCCATACCGGGCTCCACGTCTCCTGTCTTCTTTACCTGATCCACAGGACCCCTCAACTTTCCTGTAAGGGAGGCTCTATTACCCCGTTTTTCAGAGACGAGAGGTAGGGCTCAGAGAGGTTTAGTTACTTTCCAAGATCACACAGCCAGTCAGGGCAGAGCCGGGACACAACCCTGTGTCTCTGGCGGTGGCTCTATGGACTCGGCCCCTCTGTTCCCCAGGCCCCACCTCTTCCAGAACCTCCTGCTCTTCCTGTGGGCCCTGCTGAACTGTGGTTTGGGGGTCAGTGCTCAG
Seq A exon
GGTCCGGGCGAGTGGACCCCGTGGGTGTCCTGGACCCGCTGCTCCAGCTCCTGCGGGCGTGGCGTCTCTGTGCGCAGCCGGCGCTGCCTCCG
Seq C2 exon
GCTTCCTGGGGAAGAACCGTGCTGGGGAGACTCCCATGAGTACCGCCTCTGCCAGTTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185761-'5-12,'5-11,6-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=PU(52.1=80.6)
C2:
PF0009014=TSP_1=FE(41.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAACCCTGTGTCTCTGGC
R:
CAGAGGCGGTACTCATGGGAG
Band lengths:
179-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains