DreEX6046036 @ danRer10
Exon Skipping
Gene
ENSDARG00000042186 | paplnb
Description
papilin b, proteoglycan-like sulfated glycoprotein [Source:ZFIN;Acc:ZDB-GENE-030131-6023]
Coordinates
chr20:33608314-33609396:-
Coord C1 exon
chr20:33609343-33609396
Coord A exon
chr20:33608457-33608566
Coord C2 exon
chr20:33608314-33608374
Length
110 bp
Sequences
Splice sites
3' ss Seq
ACCAGAGCGTTTGGTTGCAGTTG
3' ss Score
1.66
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATGATGCTCCACTCTCTTCTCGGGACTTTGTGCCTGATCTCTGCCGTTTTCAGT
Seq A exon
TTGAGGCCACCATCTGATGATTATTATGGTGAATATGGCCCTTATGGACCCTGCAGCCGTACATGTGGTGGAGGAGTCGCTGTGAGAACAAGGATCTGCAACACGATGAG
Seq C2 exon
GACGGATGGTGGACACAATTGCGTGGGACCATCAAAGTCCTACAAGCTCTGTAACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042186-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=PU(54.0=73.0)
C2:
PF0009014=TSP_1=FE(40.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGCTCCACTCTCTTCTCG
R:
TGTGTGTTACAGAGCTTGTAGGAC
Band lengths:
114-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]