MmuEX6082016 @ mm9
Exon Skipping
Gene
ENSMUSG00000021223 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:MGI Symbol;Acc:MGI:2386139]
Coordinates
chr12:85107102-85112829:+
Coord C1 exon
chr12:85107102-85107164
Coord A exon
chr12:85111365-85111480
Coord C2 exon
chr12:85112769-85112829
Length
116 bp
Sequences
Splice sites
3' ss Seq
CCCGAGCGTGTTTTTCACAGGCT
3' ss Score
6.58
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
GCAGAGATGCAGCTGTTCCCTCTCCTGTTCTCGCTGCTGCTGACCTCCACTCCAGGGTCTTGG
Seq A exon
GCTCGAAATGTGAGGCGCCAGAGTGACACCTGGGGCACCTGGGGCGAATGGAGCCCCTGCAGCAGGACCTGTGGAGGAGGCATCAGCTTCCGGGAGCGCCCCTGCTACTCCCAGAG
Seq C2 exon
GAGAGACGGAGGCACCAGCTGCGTGGGCCCCGCGCGCAGCCACCGCACCTGCCACACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021223-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=PU(54.0=69.2)
C2:
PF0009014=TSP_1=FE(40.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGATGCAGCTGTTCCCTC
R:
AGCTGGTGCCTCCGTCTC
Band lengths:
82-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: