RnoEX6029298 @ rn6
Exon Skipping
Gene
ENSRNOG00000009448 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:RGD Symbol;Acc:1311176]
Coordinates
chr6:107248455-107254142:+
Coord C1 exon
chr6:107248455-107248520
Coord A exon
chr6:107252554-107252669
Coord C2 exon
chr6:107254082-107254142
Length
116 bp
Sequences
Splice sites
3' ss Seq
CAGGAGCTTGTTTTTCACAGGCT
3' ss Score
4.29
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
ACAGAGATGCAGCTGCTCCTTCTCCTGTCCCTCCTGCTGCTGCTGGCCTCCACGCCAGGGTCTTGG
Seq A exon
GCTCAAAATGTGAGGCGCCAGAGCGACACCTGGGGCGCCTGGGGCGAGTGGAGCCCCTGCAGCCGGACCTGTGGAGGAGGCATCAGCTTCCGGGAGCGCCCTTGCTACTCCCAGAG
Seq C2 exon
GAGAGACGGAGGCGCCAGCTGCGTGGGCCCTGCACGCAGCCACCGCACCTGCCACACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009448-'6-4,'6-3,7-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=PU(54.0=69.2)
C2:
PF0009014=TSP_1=FE(40.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGATGCAGCTGCTCCTTC
R:
CTGGCGCCTCCGTCTCTC
Band lengths:
83-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]