HsaEX6072091 @ hg19
Exon Skipping
Gene
ENSG00000100767 | PAPLN
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:HGNC Symbol;Acc:19262]
Coordinates
chr14:73706481-73712404:+
Coord C1 exon
chr14:73706481-73706540
Coord A exon
chr14:73711352-73711467
Coord C2 exon
chr14:73712344-73712404
Length
116 bp
Sequences
Splice sites
3' ss Seq
CATGGTCCTGTCTTCTGCAGGCT
3' ss Score
11.42
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GCTGAGATGCGGCTGCTCCTGCTCGTGCCGCTGCTGCTGGCTCCAGCGCCCGGGTCCTCG
Seq A exon
GCTCCCAAGGTGAGGCGGCAGAGTGACACCTGGGGACCCTGGAGCCAGTGGAGCCCCTGCAGCCGGACCTGTGGAGGGGGTGTCAGCTTCCGGGAGCGCCCCTGCTACTCCCAGAG
Seq C2 exon
GAGAGATGGAGGCTCCAGCTGCGTGGGCCCCGCCCGGAGCCACCGCTCTTGTCGCACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100767-'1-3,'1-1,2-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=0.109 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=PU(54.0=69.2)
C2:
PF0009014=TSP_1=FE(40.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATGCGGCTGCTCCT
R:
CTCCGTGCGACAAGAGCG
Band lengths:
119-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)