DreEX0053393 @ danRer10
Exon Skipping
Gene
ENSDARG00000027867 | paplna
Description
papilin a, proteoglycan-like sulfated glycoprotein [Source:ZFIN;Acc:ZDB-GENE-070815-4]
Coordinates
chr17:51093997-51106425:-
Coord C1 exon
chr17:51106358-51106425
Coord A exon
chr17:51101549-51101652
Coord C2 exon
chr17:51093997-51094057
Length
104 bp
Sequences
Splice sites
3' ss Seq
TGTTGTCACTGTGTTTCCAGCAA
3' ss Score
7.04
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CCAGTGAGGAGCTCAGGATGCTGGCGGTTGCGGTGTGTCTACAGCTGTTTCTGGCCTCGGTTTTTATG
Seq A exon
CAAGGCATTGGGGATAACTGGGGTGAGTGGAGTTCGTATGGTGAATGCAGTCGCAGTTGTGGCGGCGGGGTGACCATGAGGACGAGGCGATGTGTAACTCACAG
Seq C2 exon
GACTGATGGTGGTCACAGCTGTGTGGGTCCAGATAAGTCCTATCGCTCATGTAATATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027867_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009014=TSP_1=PU(55.8=82.9)
C2:
PF0009014=TSP_1=FE(38.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAGGAGCTCAGGATGCTG
R:
TGGATATTACATGAGCGATAGGACT
Band lengths:
126-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]