RnoALTA0002398-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000033787 | Adamtsl5
Description
ADAMTS-like 5 [Source:RGD Symbol;Acc:1305607]
Coordinates
chr7:12231544-12231928:+
Coord C1 exon
chr7:12231544-12231737
Coord A exon
chr7:12231834-12231836
Coord C2 exon
chr7:12231837-12231928
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCCTCCTTTCTGCCATCAAGTAG
3' ss Score
2.17
Exon sequences
Seq C1 exon
AGACAAGAGGACCCAGAGAGGTTTGGCTACCATCGAAGACCACACAGTCAGCCAGGGCTGAGATGGCAGTTCACTCCGATTCTGCTGATCACTGCCTCTTGGGAACCCAGTGCTCCCTCAGACCCCGCCTCTTCCCGCCTCTTCTGTTCTTGCTGTGGATTCTCCTGAGCTGTGATTTGAGGGGTGCTGCTCAG
Seq A exon
TAG
Seq C2 exon
GGTCCGGGAGAGTGGACGCTCTGGGGGTCTTGGAGCCGGTGTTCCAGCTCGTGTGGTCGGGGCGTCTCAGTGCGCAGACGCCACTGCGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033787-11-5,11-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009014=TSP_1=PU(52.1=80.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTGGATTCTCCTGAGCT
R:
GACCACACGAGCTGGAACAC
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]