RnoINT0013686 @ rn6
Intron Retention
Gene
ENSRNOG00000033787 | Adamtsl5
Description
ADAMTS-like 5 [Source:RGD Symbol;Acc:1305607]
Coordinates
chr7:12231544-12231928:+
Coord C1 exon
chr7:12231544-12231737
Coord A exon
chr7:12231738-12231836
Coord C2 exon
chr7:12231837-12231928
Length
99 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TCCTTTCTGCCATCAAGTAGGGT
3' ss Score
4.47
Exon sequences
Seq C1 exon
AGACAAGAGGACCCAGAGAGGTTTGGCTACCATCGAAGACCACACAGTCAGCCAGGGCTGAGATGGCAGTTCACTCCGATTCTGCTGATCACTGCCTCTTGGGAACCCAGTGCTCCCTCAGACCCCGCCTCTTCCCGCCTCTTCTGTTCTTGCTGTGGATTCTCCTGAGCTGTGATTTGAGGGGTGCTGCTCAG
Seq A exon
GTAAGGGAGTGAAGGAGCCCAAGAAGCACATGGGAATGTGCATGAGGTGGGAGACCGCAACTCTCCTCTTGGCTGACCCTCCTTTCTGCCATCAAGTAG
Seq C2 exon
GGTCCGGGAGAGTGGACGCTCTGGGGGTCTTGGAGCCGGTGTTCCAGCTCGTGTGGTCGGGGCGTCTCAGTGCGCAGACGCCACTGCGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033787:ENSRNOT00000060811:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009014=TSP_1=PU(52.1=80.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGATCACTGCCTCTTGG
R:
GACCACACGAGCTGGAACAC
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]