GgaINT1005546 @ galGal4
Intron Retention
Gene
ENSGALG00000024298 | ADAMTSL5
Description
ADAMTS-like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
Coordinates
chr28:3131818-3132148:-
Coord C1 exon
chr28:3132053-3132148
Coord A exon
chr28:3131913-3132052
Coord C2 exon
chr28:3131818-3131912
Length
140 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCACTCGGCCCCGCCGGCAGTCA
3' ss Score
3.21
Exon sequences
Seq C1 exon
GTACCCTCATTGTCTCTCCTCCACAGGTCCTGGTGGCCGTGGCGGGCGCTGCTCCTGGCCTGGCTCAGCCTGGGCTGTGGCATCGGCACCACACAG
Seq A exon
GTGAGGGTTGGGGGCACAGGGCTGCTCTGACCGTGCATCGGCCCCAGTCCTGACTGCCCCCTTCCTCCATTCAGGTCCCAGCTCCAGGAGAAGCAATGTGGGGCCCTGAGCCCCCCAGCCGCACTCGGCCCCGCCGGCAG
Seq C2 exon
TCAGCCCATGGTGCGTGGGGGTCGTGGGGGCCATGGAGTGCCTGCTCCAGCTCCTGCGGGGACGGCGTTGCGCTCCGCACCCGGAGGTGTCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024298:ENSGALT00000041053:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009014=TSP_1=PU(52.1=78.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCCTCATTGTCTCTCCTCCA
R:
CGCAGGAGCTGGAGCAGG
Band lengths:
154-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]